on003380 NEMAR · OpenNeuro mirror

Corticothalamic communication under analgesia, sedation and gradual ischemia: a multimodal model of controlled gradual cerebral ischemia in pig

Imported from OpenNeuro ds003380

Download zip Issues GitHub OpenNeuro ds003380

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

NeuroScience Gateway (NSG) portal.
NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/on003380), and submit.
nsgportal.org →
Local processing with nemar-cli.
Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning.
```
npm install -g nemar-cli
nemar dataset clone on003380
cd on003380 && nemar dataset get
```
Just the files.
rclone, aria2c, or any HTTPS client works against data.nemar.org/on003380/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

DOI 10.82901/nemar.on003380

NEMAR-curated copy of OpenNeuro ds003380

This is the NEMAR-curated copy. We pull from OpenNeuro periodically; each pull is a major version bump (vN.0.0). Versions between pulls (vN.x.y) are NEMAR-side fixes and improvements.

NEMAR DOI

on003380 10.82901/nemar.on003380

OpenNeuro DOI

unknown

View original on OpenNeuro View as-imported mirror (v1.0.0)

![DOI](https://doi.org/10.82901/nemar.on003380)

This sedation, ischemia, recovery experiment contains 11 animals (juvenile pigs).

Animals were surgically instrumented, and then monitored under sedation states 1-5 (isoflurane, fentanyl, propofol), followed by 1 or 2 episodes of gradual ischemia (states 6 and 8) and recovery (recovery 1 = state 7, between state 6 and 8; recovery 2, after state 8, corresponding to states 9-12).

Two crude groups are indicated: 1) sedation - animals had no ischemia and 2) ischemia - animals had sedation, followed by ischemia episodes and followed by recovery.

The scientific article (see Reference) contains all methodological details.

Martin Frasch and Reinhard Bauer, October 2, 2020

PS. Sub-12 folder is to be ignored. It was added to satisfy the BIDS validation algorithm.

Files

15 top-level entries · 1.43 GB total

dataset_description.json 524 B JSON
README.md 888 B README

.nemar 0 dirs · 1 files 636 B
- metadata.json 636 B JSON
sub-01 1 dirs · 2 files 33.1 MB
- eeg/ 2 files 33.1 MB
  - sub-01_channels.json 611 B JSON
  - sub-01_edf.tar.gz 33.1 MB
sub-02 1 dirs · 2 files 87.7 MB
- eeg/ 2 files 87.7 MB
  - sub-02_channels.json 611 B JSON
  - sub-02_edf.tar.gz 87.7 MB
sub-03 1 dirs · 2 files 82.2 MB
- eeg/ 2 files 82.2 MB
  - sub-03_channels.json 611 B JSON
  - sub-03_edf.tar.gz 82.2 MB
sub-04 1 dirs · 2 files 107 MB
- eeg/ 2 files 107 MB
  - sub-04_channels.json 611 B JSON
  - sub-04_edf.tar.gz 107 MB
sub-05 1 dirs · 2 files 102 MB
- eeg/ 2 files 102 MB
  - sub-05_channels.json 611 B JSON
  - sub-05_edf.tar.gz 102 MB
sub-06 1 dirs · 2 files 186 MB
- eeg/ 2 files 186 MB
  - sub-06_channels.json 611 B JSON
  - sub-06_edf.tar.gz 186 MB
sub-07 1 dirs · 2 files 152 MB
- eeg/ 2 files 152 MB
  - sub-07_channels.json 611 B JSON
  - sub-07_edf.tar.gz 152 MB
sub-08 1 dirs · 2 files 250 MB
- eeg/ 2 files 250 MB
  - sub-08_channels.json 611 B JSON
  - sub-08_edf.tar.gz 250 MB
sub-09 1 dirs · 2 files 175 MB
- eeg/ 2 files 175 MB
  - sub-09_channels.json 611 B JSON
  - sub-09_edf.tar.gz 175 MB
sub-10 1 dirs · 2 files 104 MB
- eeg/ 2 files 104 MB
  - sub-10_channels.json 611 B JSON
  - sub-10_edf.tar.gz 104 MB
sub-11 1 dirs · 2 files 165 MB
- eeg/ 2 files 165 MB
  - sub-11_channels.json 611 B JSON
  - sub-11_edf.tar.gz 165 MB
sub-12 1 dirs · 1 files 19.7 MB
- eeg/ 1 files 19.7 MB
  - sub-12_eeg.edf 19.7 MB Vis · soon